Pareto Task Inference

Pareto Task Inference#

set_obsm(adata, obsm_key, n_dimensions)

Sets the obsm key and dimensionality to be used as input for archetypal analysis (AA).

compute_archetypes(adata, n_archetypes[, ...])

Perform Archetypal Analysis (AA) on the input data.

compute_selection_metrics(adata[, min_k, ...])

Compute selection diagnostics for Archetypal Analysis (AA) across different archetype counts.

summarize_aa_metrics(adata, /, **filters)

Concatenate cached selection metrics across archetype counts for a single AA configuration.

compute_bootstrap_variance(adata, n_bootstrap)

Perform bootstrap sampling to compute archetypes and assess their stability.

compute_t_ratio(adata, /, *[, ...])

Compute the t-ratio from an AnnData object that contains archetypes.

get_aa_result(adata, /, *[, return_config])

Fuzzy-get: with no filters require exactly one result; with filters require exactly one match.

t_ratio_significance(adata, *[, n_iter, ...])

Assesses the significance of the polytope spanned by the archetypes by comparing the t-ratio of the original data to t-ratios computed from randomized datasets.