Enrichment

Enrichment#

compute_archetype_expression(adata[, layer, ...])

Calculate a weighted average gene expression profile for each archetype.

compute_archetype_weights(adata[, mode, ...])

Calculate weights for the data points based on their distance to archetypes using a squared exponential kernel.

compute_meta_enrichment(adata, meta_col[, ...])

Compute the enrichment of metadata categories across archetypes.

extract_enriched_processes(est, pval[, ...])

Extract top enriched biological processes for each archetype based on significance and enrichment score.

extract_specific_processes(est, pval[, n, ...])

Extract the top biological processes that are uniquely enriched in each archetype.